Biology

Sympatric species share identical geographical spaces, climatic conditions and survival pressures. Comparative chloroplast genomes among Anna and Lysionotus sympatric species enable exploration of genome-wide evolutionary dynamics of sympatric species. In this study, we assembled and annotated 10 complete chloroplast genomes, representing sympatric species distributed along the Sino-Vietnamese border. We conducted a comparison of chloroplast genomes, characterized their adaptive evolution and used multiple methods to clarify their phylogenetic relationships. Key findings included the following: 1. The number of CDs, rRNA and tRNA varied among different species, whereas they were relatively conserved between the two genera; 2. psaB-psaA, trnL-UAG and ndhD-psaC were identified as potential molecular markers for Anna species, with clpP and ycf1 proposed as effective molecular markers for Lysionotus species; 3. the types of simple sequence repeats (SSRs) and large sequence repeats (LRSs) showed a higher conservation in Lysionotus compared with Anna; 4. the codon usage preferences of the two genera showed convergent evolutionary trends and natural selection played a dominant role, with ycf1 and atpH being confirmed as significantly positively selected genes; 6. phylogenetic analyses using multiple approaches (ML, BI and NJ) consistently verified that Anna and Lysionotus each formed a well-supported monophyletic group. This study offers molecular insights into adaptation and differentiation patterns among distinct plant genera inhabiting the same extreme habitat.

Global climate problems and the sharp decline in biodiversity have attracted widespread attention. Orchids, as the “flagship” species of biodiversity, are important indicators of ecological changes. This study took Chongqing as the study area and conducted a comprehensive survey of orchids through field investigation combined with data review to clarify Chongqing’s diversity distribution pattern. The distribution of orchids was characterized by “high in the east and low in the west, high in the north and low in the south” horizontally. Vertically, the distribution was characterized by an obvious “unimodal distribution”, with higher abundance in the low and middle altitude areas of 500–1499 m. The minimum temperature of the coldest month (Bio6), isothermality (Bio3), altitude (Bio20), and precipitation of the wettest season (Bio16) were the main environmental factors affecting the distribution of the orchid habitat. The suitable habitat of orchids would be greatly reduced in the future (2070SSP-585), and the suitable habitat tends to migrate to the high-altitude areas; therefore, we should pay more attention to the conservation and sustainable use of orchid plant resources.

This study aimed to explore genetic variants associated with serum albumin (ALB) levels in Chinese winter sports athletes using genome-wide association analysis (GWAS) and to investigate potential regulatory mechanisms using bioinformatics annotation. A total of 382 Chinese winter sports athletes were recruited. ALB levels were compared between elite and non-elite athletes. GWAS was conducted using PLINK v1.9, with ALB as the phenotype and sex, age, and principal components as covariates. Associated SNPs were annotated using GTEx and SNPnexus. No significant differences were observed in ALB levels between elite and non-elite male or female athletes, and ALB levels in all groups followed a normal distribution. We identified 113 SNPs reaching a suggestive significance threshold (p < 1 × 10⁻⁵), with per-variant variance explained estimates (7.11–11.76%) reflecting model fit within this cohort. A stepwise regression model highlighted nine candidate SNPs that together explained 51.1% of ALB variance in the study sample. Functional annotation suggested that several variants show eQTL or sQTL signals in tissues relevant to ALB biology (e.g., liver and kidney), and pathway enrichment analyses implicated amino acid and hormone metabolism. Overall, these findings are hypothesis-generating; independent replication in additional and ancestry-matched cohorts (and follow-up functional studies) is required to confirm the robustness of the associations and clarify causal mechanisms.